Package: bootcluster 0.4.1

bootcluster: Bootstrapping Estimates of Clustering Stability

Implementation of the bootstrapping approach for the estimation of clustering stability and its application in estimating the number of clusters, as introduced by Yu et al (2016)<doi:10.1142/9789814749411_0007>. Implementation of the non-parametric bootstrap approach to assessing the stability of module detection in a graph, the extension for the selection of a parameter set that defines a graph from data in a way that optimizes stability and the corresponding visualization functions, as introduced by Tian et al (2021) <doi:10.1002/sam.11495>. Implemented out-of-bag stability estimation function and k-select Smin-based k-selection function as introduced by Liu et al (2022) <doi:10.1002/sam.11593>. Implemented ensemble clustering method based-on k-means clustering method, spectral clustering method and hierarchical clustering method.

Authors:Han Yu [aut], Mingmei Tian [aut], Tianmou Liu [aut, cre]

bootcluster_0.4.1.tar.gz
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bootcluster_0.4.1.tgz(r-4.5-any)bootcluster_0.4.1.tgz(r-4.4-any)bootcluster_0.4.1.tgz(r-4.3-any)
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bootcluster.pdf |bootcluster.html
bootcluster/json (API)

# Install 'bootcluster' in R:
install.packages('bootcluster', repos = c('https://tianmoul.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • wine - Wine Data Set

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.18 score 1 stars 3 scripts 753 downloads 3 mentions 13 exports 70 dependencies

Last updated 4 months agofrom:2e7e94ad11. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 13 2025
R-4.5-winOKMar 13 2025
R-4.5-macOKMar 13 2025
R-4.5-linuxOKMar 13 2025
R-4.4-winOKMar 13 2025
R-4.4-macOKMar 13 2025
R-4.4-linuxOKMar 13 2025
R-4.3-winOKMar 13 2025
R-4.3-macOKMar 13 2025

Exports:ensemble.cluster.multiesmbl.stabilityk.selectk.select_refmin_agreementnetwork.stabilitynetwork.stability.outputob.stabilityref_distref_dist_binref_dist_pcastabilitythreshold.select

Dependencies:classcliclustercodacodetoolscolorspacecpp11crayonDEoptimRdiptestdoParalleldplyrfansifarverflexclustflexmixforcatsforeachfpcgenericsGGallyggplot2ggstatsgluegridExtragtablehmsigraphintergraphisobanditeratorskernlablabelinglatticelifecyclemagrittrMASSMatrixmclustmgcvmodeltoolsmunsellnetworknlmennetpatchworkpillarpkgconfigplyrprabclusprettyunitsprogresspurrrR6RColorBrewerRcpprlangrobustbasescalessnastatnet.commonstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr