Package: bootcluster 0.3.2
bootcluster: Bootstrapping Estimates of Clustering Stability
Implementation of the bootstrapping approach for the estimation of clustering stability and its application in estimating the number of clusters, as introduced by Yu et al (2016)<doi:10.1142/9789814749411_0007>. Implementation of the non-parametric bootstrap approach to assessing the stability of module detection in a graph, the extension for the selection of a parameter set that defines a graph from data in a way that optimizes stability and the corresponding visualization functions, as introduced by Tian et al (2021) <doi:10.1002/sam.11495>.
Authors:
bootcluster_0.3.2.tar.gz
bootcluster_0.3.2.zip(r-4.5)bootcluster_0.3.2.zip(r-4.4)bootcluster_0.3.2.zip(r-4.3)
bootcluster_0.3.2.tgz(r-4.4-any)bootcluster_0.3.2.tgz(r-4.3-any)
bootcluster_0.3.2.tar.gz(r-4.5-noble)bootcluster_0.3.2.tar.gz(r-4.4-noble)
bootcluster_0.3.2.tgz(r-4.4-emscripten)bootcluster_0.3.2.tgz(r-4.3-emscripten)
bootcluster.pdf |bootcluster.html✨
bootcluster/json (API)
| # Install 'bootcluster' in R: |
| install.packages('bootcluster', repos = c('https://tianmoul.r-universe.dev', 'https://cloud.r-project.org')) |
- wine - Wine Data Set
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:ef6b159028. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 18 2024 |
| R-4.5-win | NOTE | Sep 18 2024 |
| R-4.5-linux | NOTE | Sep 18 2024 |
| R-4.4-win | NOTE | Sep 18 2024 |
| R-4.4-mac | NOTE | Sep 18 2024 |
| R-4.3-win | NOTE | Sep 18 2024 |
| R-4.3-mac | NOTE | Sep 18 2024 |
Exports:k.selectk.select_refnetwork.stabilitynetwork.stability.outputob.stabilitystabilitythreshold.select
Dependencies:backportsbitbit64broombroom.helperscardsclassclicliprclustercodacodetoolscolorspacecpp11crayonDEoptimRdiptestdoParalleldplyrfansifarverflexclustflexmixforcatsforeachfpcgenericsGGallyggplot2ggstatsgluegridExtragtablehavenhmsigraphintergraphisobanditeratorskernlablabelinglabelledlatticelifecyclemagrittrMASSMatrixmclustmgcvmodeltoolsmunsellnetworknlmennetpatchworkpillarpkgconfigplyrprabclusprettyunitsprogresspurrrR6RColorBrewerRcppreadrrlangrobustbasescalessnastatnet.commonstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimate number of clusters | k.select |
| Estimate number of clusters | k.select_ref |
| Estimate of detect module stability | network.stability |
| Plot method for objests from threshold.select | network.stability.output |
| Estimate the stability of a clustering based on non-parametric bootstrap out-of-bag scheme, with option for subsampling scheme | ob.stability |
| Estimate clustering stability of k-means | stability |
| Estimate of the overall Jaccard stability | threshold.select |
| Wine Data Set | wine |
